rs30875255 SNP Detail

Summary

• ID
  rs30875255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA TTGGGGATAT GGTGGAGTTC
  Y
  GGGGGCCGAG CGGGTTGCTC AGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45068436	mCV24750350	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						C
ss49678563	NES13000817	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30875255					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678563	NES13000817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1262 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	1561 bp downstream
Tssr217	transcription start site region 217	1697 bp downstream
Tssr218	transcription start site region 218	1605 bp downstream
Tssr8875	transcription start site region 8875	1943 bp downstream
Tssr8876	transcription start site region 8876	1931 bp downstream
Tssr8877	transcription start site region 8877	1875 bp downstream
Tssr8878	transcription start site region 8878	1854 bp downstream
Tssr8879	transcription start site region 8879	1662 bp downstream
Tssr8880	transcription start site region 8880	1638 bp downstream
Tssr8881	transcription start site region 8881	1341 bp downstream
Tssr8882	transcription start site region 8882	1310 bp downstream
Tssr8883	transcription start site region 8883	1282 bp downstream
Tssr8884	transcription start site region 8884	419 bp upstream