rs30875256 SNP Detail

Summary

• ID
  rs30875256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTTGGG GGGAAGCTAG
  CCTTTCGAGA ACAAGAAAGA TGTGTATGCA TACATGTGCA TACACACGCA GAGACGCCAA
  AAGAAAAGGA ATCCAAAGAC TCTGGGATTT TTAGAAGCTT CCTGGATTCC TCTGACAACA
  GGAAATGATG AGTCCTTTGT GGGTCTAAGG GAAGGGAGAA AAGATTATGG GTGTAATACG
  Y
  TCTGATTTGG TTTTCATTAC ATCTCAAATG TGGCATTTTC TTTCTTTCTG CCTCATCAGG
  TTTATCTGAA AGGTGTGCAC CCCAAATTTC CTGAAGGAGG GAAGATGTCT CAATACCTGG
  ATAGCCTGAA GATTGGGGAT ATGGTGGAGT TCCGGGGGCC GAGCGGGTTG CTCAGTTATG
  CTGGGAAAGG TGAGTATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678565	NES13000815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30875256					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678565	NES13000815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1109 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	1408 bp downstream
Tssr217	transcription start site region 217	1544 bp downstream
Tssr218	transcription start site region 218	1452 bp downstream
Tssr8875	transcription start site region 8875	1790 bp downstream
Tssr8876	transcription start site region 8876	1778 bp downstream
Tssr8877	transcription start site region 8877	1722 bp downstream
Tssr8878	transcription start site region 8878	1701 bp downstream
Tssr8879	transcription start site region 8879	1509 bp downstream
Tssr8880	transcription start site region 8880	1485 bp downstream
Tssr8881	transcription start site region 8881	1188 bp downstream
Tssr8882	transcription start site region 8882	1157 bp downstream
Tssr8883	transcription start site region 8883	1129 bp downstream
Tssr8884	transcription start site region 8884	572 bp upstream
Tssr13793	transcription start site region 13793	1879 bp upstream