rs30875261 SNP Detail

Summary

• ID
  rs30875261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134334763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATCTCTA ACCTCCAGGC
  TTCTCTCTTT CCTTAGGACT TATTATAACC CGCCTCCTAT CCCAGAAAAC ACTAATTTTC
  CATTATGCAA ATCCTCTGCT TACCTGCTGC TGCTAAGGCC CTGGCAGTAG GGAGTTTCAA
  AGGTGGGAGG AGGCAGGAGA TACTGCGGAG GGGTCCTCTC AGTGGGACTG CAGCTTATGT
  R
  TCTCTCTCCA TGGTTCCCAG GTAAGCACGT CTACCTCTCT GCCCGAATTG ATGGCAGTCT
  GGTCATCAGG CCTTACACCC CTGTCACCAG TGATGAAGAC CAAGGCTATG TAGATCTTGT
  CATCAAGGTA AGTATATAGA AAGGAAATCT CCGAGCTGGG GGGATGGCTG GGTTGTTGAG
  TAAAGCACTT GCCATCCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678570	NES13000810	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30875261					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678570	NES13000810	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134334763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	620 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	919 bp downstream
Rr418908	regulatory region 418908	1234 bp distal
Rr418909	regulatory region 418909	1138 bp proximal
Tssr217	transcription start site region 217	1055 bp downstream
Tssr218	transcription start site region 218	963 bp downstream
Tssr8875	transcription start site region 8875	1301 bp downstream
Tssr8876	transcription start site region 8876	1289 bp downstream
Tssr8877	transcription start site region 8877	1233 bp downstream
Tssr8878	transcription start site region 8878	1212 bp downstream
Tssr8879	transcription start site region 8879	1020 bp downstream
Tssr8880	transcription start site region 8880	996 bp downstream
Tssr8881	transcription start site region 8881	699 bp downstream
Tssr8882	transcription start site region 8882	668 bp downstream
Tssr8883	transcription start site region 8883	640 bp downstream
Tssr8884	transcription start site region 8884	1061 bp upstream
Tssr13793	transcription start site region 13793	1390 bp upstream