rs30875508 SNP Detail

Summary

• ID
  rs30875508
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119355415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGTAAAA ATCACAATGC TATCCACTTA TTAAGGTTCT
  TTGATTCCTT AAAGTGCATC TGAATCTGTA TTCATTGTGC CCAATTTCAG GTAACTATTG
  W
  GTTGATGAGG CTAGGGTATT GTGTCTCCAT CAGAATAGCT AAGAGCTGAT GGTGATGTAC
  TTTAGCCATG TTTTTAAAGG TATCTGGATC TTAGTGGTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46454435	mCV22975017	ABI	CRAMUS_MOUSE	f	SNP	A				T	A
ss47331324	NES11381338	PERLEGEN	MM_PANEL2	f	SNP		A	T	T		A	T	A		A	T
ss138908023	ENSMUSSNP952248	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss324205881	CHEV_12_120630153	CHEVERUD	SCREENING_POP	f	SNP									A			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30875508					SNP	A	A	T	T	T	A	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331324	NES11381338	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119355415 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	within coordinates
Rr474303	regulatory region 474303	1295 bp distal
Rr474304	regulatory region 474304	882 bp distal
Tssr115574	transcription start site region 115574	991 bp downstream
Tssr115575	transcription start site region 115575	988 bp downstream