rs30875858 SNP Detail

Summary

• ID
  rs30875858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:65334350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA GGTCTCCTCC AGAAAGCATT
  Y
  AGACTAACGT CAACTCTTCA GGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39230210	mCV24366940	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss324656076	CHEV_14_65715738	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30875858					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:65334350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6626	CpG island 6626	495 bp proximal
Extl3	exostosin-like glycosyltransferase 3	within coordinates
Gm52119	predicted gene, 52119	1828 bp upstream
Rr369853	regulatory region 369853	580 bp upstream
Rr404153	regulatory region 404153	1106 bp upstream
Tssr129239	transcription start site region 129239	1130 bp downstream