rs30876004 SNP Detail

Summary

• ID
  rs30876004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134334586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACATTCT GGGGCTGCCT
  GTGGGTAAGA AAAAAGGGAG TGGGCTTCTC TACTTGGCAT CGTATGAGGG CGAGTCACTT
  CTTAGGTGGT TTTCCTGCTA AGAAAAACCA TTGCCCTTCT GTCAATCCTT CAGCCCATGA
  GGGACCACTC TTTTAGGGTG TGGCTTCTGT GCCCCTACGC ATCTCTAACC TCCAGGCTTC
  Y
  CTCTTTCCTT AGGACTTATT ATAACCCGCC TCCTATCCCA GAAAACACTA ATTTTCCATT
  ATGCAAATCC TCTGCTTACC TGCTGCTGCT AAGGCCCTGG CAGTAGGGAG TTTCAAAGGT
  GGGAGGAGGC AGGAGATACT GCGGAGGGGT CCTCTCAGTG GGACTGCAGC TTATGTGTCT
  CTCTCCATGG TTCCCAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678573	NES13000807	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30876004					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678573	NES13000807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134334586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	443 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	742 bp downstream
Rr418908	regulatory region 418908	1057 bp distal
Rr418909	regulatory region 418909	1315 bp proximal
Tssr217	transcription start site region 217	878 bp downstream
Tssr218	transcription start site region 218	786 bp downstream
Tssr8875	transcription start site region 8875	1124 bp downstream
Tssr8876	transcription start site region 8876	1112 bp downstream
Tssr8877	transcription start site region 8877	1056 bp downstream
Tssr8878	transcription start site region 8878	1035 bp downstream
Tssr8879	transcription start site region 8879	843 bp downstream
Tssr8880	transcription start site region 8880	819 bp downstream
Tssr8881	transcription start site region 8881	522 bp downstream
Tssr8882	transcription start site region 8882	491 bp downstream
Tssr8883	transcription start site region 8883	463 bp downstream
Tssr8884	transcription start site region 8884	1238 bp upstream
Tssr13793	transcription start site region 13793	1213 bp upstream