rs30876008 SNP Detail

Summary

• ID
  rs30876008
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134333898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTCCGC CTCCGGGCCC
  GCCCCGCGGC GCATTGTGGG ATCTTTCCGC CCCACCGGAG CGGGACGCAC CTCTAGGTCA
  TGGGGATCCA GCCGGTAAGA CCCTCGTTCT GTGCCCTGAG CCCGGGGTCA CCGCCTCAGC
  TGGTTCTGGG CAGTCTGCCC CGCGGGGCTG TGCCATACCC ACCTTGGATG CTGGAGTCTC
  S
  CTGCACGAGC TGCGGGCTGA GTTCACTGCT CCGCTTGCTT CTGAGGTTTT GGCATGCTTT
  CTCGCTGGAG CTCAGGATCG CTACTCCTGG TCCTCCACCC ACACCCTGGC ACTTCCTCAG
  CGTGGCGATC ACGCTTCCTC CTCTATCCAC AGAGCCCGGT CTTGCTAGCC TCTCTGGGGG
  TGGGGCTGCT TACTCTGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678577	NES13000803	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30876008					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678577	NES13000803	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134333898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	within coordinates
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	54 bp downstream
Rr418908	regulatory region 418908	369 bp distal
Tssr217	transcription start site region 217	190 bp downstream
Tssr218	transcription start site region 218	98 bp downstream
Tssr8875	transcription start site region 8875	436 bp downstream
Tssr8876	transcription start site region 8876	424 bp downstream
Tssr8877	transcription start site region 8877	368 bp downstream
Tssr8878	transcription start site region 8878	347 bp downstream
Tssr8879	transcription start site region 8879	155 bp downstream
Tssr8880	transcription start site region 8880	131 bp downstream
Tssr8881	transcription start site region 8881	155 bp upstream
Tssr8882	transcription start site region 8882	174 bp upstream
Tssr8883	transcription start site region 8883	214 bp upstream
Tssr8884	transcription start site region 8884	1926 bp upstream
Tssr13793	transcription start site region 13793	525 bp upstream