rs30876298 SNP Detail

Summary

• ID
  rs30876298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94900081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA GCCAGAATAG CTCTCAGCCT
  R
  ATCTTTAATC TTCATGCCCA CTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46454532	mCV22694197	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss132651938	ENSMUSSNP148934	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss323817418	CHEV_11_94870569	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30876298					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94900081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	351 bp proximal
Gm36385	predicted gene, 36385	124 bp downstream
Gm51875	predicted gene, 51875	within coordinates
Gm72634	predicted gene, 72634	within coordinates
Rr454921	regulatory region 454921	1496 bp distal
Rr454922	regulatory region 454922	867 bp distal
Rr454923	regulatory region 454923	67 bp proximal
Rr454924	regulatory region 454924	134 bp proximal
Rr454925	regulatory region 454925	635 bp proximal
Rr454926	regulatory region 454926	986 bp proximal
Rr454927	regulatory region 454927	1725 bp proximal
Samd14	sterile alpha motif domain containing 14	624 bp upstream
Tssr104328	transcription start site region 104328	509 bp upstream
Tssr104329	transcription start site region 104329	597 bp upstream
Tssr104330	transcription start site region 104330	643 bp upstream
Tssr104331	transcription start site region 104331	681 bp upstream
Tssr104332	transcription start site region 104332	705 bp upstream
Tssr104333	transcription start site region 104333	711 bp upstream
Tssr104334	transcription start site region 104334	820 bp upstream
Tssr104335	transcription start site region 104335	845 bp upstream
Tssr104336	transcription start site region 104336	921 bp upstream
Tssr104337	transcription start site region 104337	989 bp upstream
Tssr104338	transcription start site region 104338	1022 bp upstream
Tssr104339	transcription start site region 104339	1042 bp upstream
Tssr104340	transcription start site region 104340	1111 bp upstream
Tssr104341	transcription start site region 104341	1129 bp upstream
Tssr104342	transcription start site region 104342	1217 bp upstream
Tssr110238	transcription start site region 110238	1038 bp downstream