rs30876700 SNP Detail

Summary

• ID
  rs30876700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94900220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCCGGC TCCAAATCCT
  GTCTGTGTCT TCAATTCTAT AGCCAGAATA GCTCTCAGCC TGATCTTTAA TCTTCATGCC
  CACTGCTGTC ATCATTCAAC AATCCCTTGA GGCCAGCGCC CAGACTTCCG GTTGCCCTCT
  ACAGTCCGTT CTCCACTGGG GTGCCCAAAG AATCTTTCTA AAATCTATGT TGGAACTCCT
  Y
  CCTCCTCGGT TAACCTTTTA TTGGGGGGCG GGGCAGGAAG TAATAGAATG AAGTATCAAC
  CCTCCCACCT CAATTTTCTC TACTGGTCCA TCCACCCTGC AATGCCCAGG AGTAAGTCTC
  CCATAGCTTG GCCAGCAGGA GTAGCCACAC TTCTCTAGGA ATCTTCCCTG TGTCCTTCTC
  CAGTGCCTCG GGTGCACGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46454059	mCV22694198	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss323817419	CHEV_11_94870708	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30876700					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94900220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	212 bp proximal
Gm36385	predicted gene, 36385	within coordinates
Gm51875	predicted gene, 51875	60 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr454921	regulatory region 454921	1635 bp distal
Rr454922	regulatory region 454922	1006 bp distal
Rr454923	regulatory region 454923	51 bp distal
Rr454924	regulatory region 454924	within coordinates
Rr454925	regulatory region 454925	496 bp proximal
Rr454926	regulatory region 454926	847 bp proximal
Rr454927	regulatory region 454927	1586 bp proximal
Samd14	sterile alpha motif domain containing 14	485 bp upstream
Tssr104328	transcription start site region 104328	370 bp upstream
Tssr104329	transcription start site region 104329	458 bp upstream
Tssr104330	transcription start site region 104330	504 bp upstream
Tssr104331	transcription start site region 104331	542 bp upstream
Tssr104332	transcription start site region 104332	566 bp upstream
Tssr104333	transcription start site region 104333	572 bp upstream
Tssr104334	transcription start site region 104334	681 bp upstream
Tssr104335	transcription start site region 104335	706 bp upstream
Tssr104336	transcription start site region 104336	782 bp upstream
Tssr104337	transcription start site region 104337	850 bp upstream
Tssr104338	transcription start site region 104338	883 bp upstream
Tssr104339	transcription start site region 104339	903 bp upstream
Tssr104340	transcription start site region 104340	972 bp upstream
Tssr104341	transcription start site region 104341	990 bp upstream
Tssr104342	transcription start site region 104342	1078 bp upstream
Tssr110238	transcription start site region 110238	899 bp downstream