rs30876904 SNP Detail

Summary

• ID
  rs30876904
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134254047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGGCTTC TCCTTAAAGG
  ACTCTGCCTT AAGCCTGGAG TGGTGGCGCA CGCCTTTAAT CCTAGAACTC AGGAAGCAAA
  GGCAGGTGGA TCTCTGAGTT CAAGGCCAGC CTGGTCTACA GAGTGAGTTC CAGGACAGAG
  AGATGGCTAC ACAGAGAAAC CCTGTCTCAA AAAACCAAAA CAAAACAAAA CAAAAAGTAG
  K
  GAAGGCCAGC ATTACCTTCT CAACTGAGAG ACTGGAGGAC TCAAGGCACT GTGCTGAATG
  GTGTCTCACT GTGGGGAGCA ACTCCCTGGC CCCCAGCCTG CTGTGCCTCC CTGGCACCAA
  AAGAGCCTAG GACACAGGAG GTGATAGAAG ATCTCAGGCC CCCGGCCCAC TTGCCTTGGT
  GAGGGCTGCG ATTCTCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678880	NES13002049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30876904					SNP	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678880	NES13002049	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134254047 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Rr12474	regulatory region 12474	1247 bp distal
Rr24642	regulatory region 24642	804 bp distal
Rr24643	regulatory region 24643	467 bp proximal
Rr24644	regulatory region 24644	1594 bp proximal
Tssr8873	transcription start site region 8873	758 bp downstream
Tssr13789	transcription start site region 13789	638 bp downstream
Tssr13790	transcription start site region 13790	655 bp downstream