rs30876909 SNP Detail

Summary

• ID
  rs30876909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134252786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGGTAAG CATGCCAGAA
  TGCTAGCCTC CTGGTGGCTA TTACCTAAAC CACTACTAAA CCAGCTAGCC ATTCCTGGCC
  ATTATCCAGT CATGGGGACC CTGTTGTATC TGTACCCAGA ACATTACATC CCTTACAGTC
  AGGAAACCCT TTCTTTACAT CCTCCTGCTA TGACTCACTT GAACACACCA ATCACTTGAG
  Y
  CCATCCCTTC GAGACAGATT TTGCTCAGCA TCCCCCCACA ACATCCTCTA CTGGAACTTA
  AGTCTCGGGC CTCATTCCAG GTCTGCCAGG ACAATAGTGG CTACCCCGGC AACTCCACCA
  TCATAGAAGT AAGGAAACTG AGGTGCAGTT AGGGAGAGGC TCTGTGACCT GACCAATAGA
  CTCTGAGAGA GGAGGAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678885	NES13002169	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30876909					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678885	NES13002169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134252786 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Rr12473	regulatory region 12473	1986 bp distal
Rr12474	regulatory region 12474	within coordinates
Rr24642	regulatory region 24642	167 bp proximal
Rr24643	regulatory region 24643	1728 bp proximal
Tssr8873	transcription start site region 8873	496 bp upstream
Tssr13789	transcription start site region 13789	1899 bp downstream
Tssr13790	transcription start site region 13790	1916 bp downstream