rs30876910 SNP Detail

Summary

• ID
  rs30876910
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134252458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGTTC TTCTCTTCCA
  GCTGCCCTTC CAGCTGCCGC AGATGTTCCT CAATGTTGCC ATGACGTTCC TCAGCCTAGG
  TGCAGGGACA GTCAGCCACC TTGGAGATCT TTGTTCCCTA TGCTCAGGCC CCATATGCCA
  CAAACTCTGG TGTCAAGGTG GTCTTGGGGA TCGGGGGTCT CGGGATCAGA AACCCAGCTC
  W
  CTCCCATCAT CTTGGAGCAG AACTGTTACT CCCTTTTCCC CTCTCCTTCT TGCCCAGGGC
  TAACCTTAAA GTGTATGCCC ACTGGACCCA CAAGAACTAA AGGGAATAAT CCACAGTAAA
  TGTCCAAGTG CGGTAAGCAT GCCAGAATGC TAGCCTCCTG GTGGCTATTA CCTAAACCAC
  TACTAAACCA GCTAGCCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678886	NES13002167	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30876910					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678886	NES13002167	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134252458 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Tssr8873	transcription start site region 8873	824 bp upstream