rs30876913 SNP Detail

Summary

• ID
  rs30876913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134251524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACAGTCT ATAGCTATTG
  TGTCAGGCGG GCGATGGCAT AGTGTGCGCG TGACCTAAGA GAGGCTAGCA GAGCAGCTTC
  GTGAACACCA GGCACTGTGC CTGAGGCCTC CCACATGAGC AGGGCTAGCC AGCAGCTGGG
  TACCTGTAGC TCTTCTATGA ACTCTCTATG ACCCAGGAGT TCTCCAACTC CTGGATCAGC
  R
  TTTTCTGAGG GAGAGCAGCT GTGAGCCAGG GGTCCTGACT CTGATCTTGG AGTGACCCCG
  ATCTCAGGTG TCTTCTTCTT CCAGCCCTAC CTCTCCAGGC CAGCATGGTC CTCCCTGGCC
  AGGGATGCTC CTCCCTTCCC TCGTTGTGGC TCAGGTGGCT TTACCAATAT GCTTATTTTT
  ATATGCCCTT CCCCCCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49678889	NES13002161	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30876913					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678889	NES13002161	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134251524 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Rr12473	regulatory region 12473	724 bp distal
Rr12474	regulatory region 12474	877 bp proximal
Rr24641	regulatory region 24641	808 bp distal
Rr24642	regulatory region 24642	1429 bp proximal
Tssr8873	transcription start site region 8873	1758 bp upstream