rs30877754 SNP Detail

Summary

• ID
  rs30877754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134251355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTA TAGCTATTGT GTCAGGCGGG
  Y
  GATGGCATAG TGTGCGCGTG ACCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45063451	mCV22357614	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss49678890	NES13002160	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T		C	C	C	T	C	C	C	C	C
ss145505207	ENSMUSSNP4152752	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30877754					SNP	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678890	NES13002160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134251355 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Rr12473	regulatory region 12473	555 bp distal
Rr12474	regulatory region 12474	1046 bp proximal
Rr24641	regulatory region 24641	639 bp distal
Rr24642	regulatory region 24642	1598 bp proximal
Rr30619	regulatory region 30619	1956 bp distal
Tssr8873	transcription start site region 8873	1927 bp upstream