rs30879484 SNP Detail

Summary

• ID
  rs30879484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155607062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCTTTCT GGAATGATCT
  AGAAGAGTAG GTCTTAAAAT GCCACACCAT GGCAAACAAA CAAACAAACA ACAAACAAAC
  AAACCAAGTT ATTAACTCTT TACTGTTAAG CAAAATATAT ACTTGCTTCT AAGTTCCCAT
  CATTGTATGA AGACAGGTTG TCACTTGGGT ATCAAGTCTT TGAAGACATA TCTGTTAGGA
  Y
  AAAAAGTGTC TAATTTTGAA GATCAAACAG ACCCAGGCAG GCCTCCCCAA CACTATGTCA
  ACAGATGCTC TTTATATGTG AAGACCCAAT GTTCAATGCT GCTTCTAGGA GAAACACTTA
  TCCTGTGGAA TGTTTGGGGA GCTCTTGATC AGTCAAAAGT ATTTAGTGAC AGATCAAGAG
  CTTGTGGTCC TGTGGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47494104	NES10324349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss321032750	CHEV_3_155564389	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30879484					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47494104	NES10324349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155607062 () rs orientation: forward

Symbol	Name	Function Class
Gm37102	predicted gene, 37102	1923 bp upstream