rs30880603 SNP Detail

Summary

• ID
  rs30880603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85697137 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCGCA CTATGCGGCT CGAGTGGGCG
  Y
  CCTTGTTGCT GCTACTGCTG CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46455894	mCV22975995	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss60245682	NES15750919	PERLEGEN	MM_PANEL2	r	SNP	G		A	G	G	G	A		A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30880603					SNP	C	C	T	C	C	C	T	C	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245682	NES15750919	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85697137 () rs orientation: reverse

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	within coordinates
Cpgi8392	CpG island 8392	382 bp proximal
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	737 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	893 bp upstream
Tssr141914	transcription start site region 141914	within coordinates
Tssr141915	transcription start site region 141915	16 bp downstream
Tssr141916	transcription start site region 141916	45 bp downstream
Tssr141917	transcription start site region 141917	354 bp downstream
Tssr141918	transcription start site region 141918	432 bp downstream
Tssr141919	transcription start site region 141919	470 bp downstream
Tssr141920	transcription start site region 141920	807 bp downstream
Tssr141921	transcription start site region 141921	869 bp downstream
Tssr141922	transcription start site region 141922	1098 bp downstream
Tssr141923	transcription start site region 141923	1543 bp downstream