rs30881178 SNP Detail

Summary

• ID
  rs30881178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134024882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAGCAGT GAGAGAGACG
  ATCCTTTGGA GGGGACTGGG AGATAGGAAA TCTAAAAGGC ATTTCTGTTT ATCTTTTCTG
  AGAACTCTTT ACATGAAAGA CATCTGATTG GCCTAAGAGT GCCTCGTTGG CACATTCCCC
  TCTTCCCCCC TTCGATCGAT CGGTGTTGAT CATCTCCCAT AGCTTCTGGT TTACCCTATC
  Y
  TCCAATCTTC CCAATGATCT CATAGACAGG CTATGTGATT AGAGAGGCCA ACCGGGCCCT
  GTAGCTCCCA GCAGCTCCTC TCCACTCCCA GCAGCTTTGC CCTGGGCTGG TCCACTGATG
  AAGCCCCAAG GAGTTTGGGA GTGGAGTTCA AGATCCCTCA AAGAAGGGTG ACTTGGTATC
  AGGGTCAATC CATGGGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49679934	NES12993864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30881178					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679934	NES12993864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134024882 () rs orientation: forward

Symbol	Name	Function Class
Gm32039	predicted gene, 32039	1968 bp upstream
Gm38140	predicted gene, 38140	within coordinates
Gm70605	predicted gene, 70605	1724 bp downstream
Gm70608	predicted gene, 70608	914 bp downstream
Rr372065	regulatory region 372065	334 bp upstream
Tssr13772	transcription start site region 13772	1976 bp downstream
Tssr13773	transcription start site region 13773	1994 bp downstream