rs30881180 SNP Detail

Summary

• ID
  rs30881180
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134024750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAAGCG TGCCTAGTAC
  ACTCTGCTCG AAGAGCAGCT GGCACACTGC TTATCAGTCC ACACCCCCAG GGCTGCTGAG
  GGCCTTGCTT TTTTTCTCCT CTGTATATAG TGAAAGCCCA TGAGTGCTTC ACCAATAGCA
  GTGAGAGAGA CGATCCTTTG GAGGGGACTG GGAGATAGGA AATCTAAAAG GCATTTCTGT
  W
  TATCTTTTCT GAGAACTCTT TACATGAAAG ACATCTGATT GGCCTAAGAG TGCCTCGTTG
  GCACATTCCC CTCTTCCCCC CTTCGATCGA TCGGTGTTGA TCATCTCCCA TAGCTTCTGG
  TTTACCCTAT CCTCCAATCT TCCCAATGAT CTCATAGACA GGCTATGTGA TTAGAGAGGC
  CAACCGGGCC CTGTAGCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49679936	NES12993860	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30881180					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679936	NES12993860	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134024750 () rs orientation: forward

Symbol	Name	Function Class
Gm32039	predicted gene, 32039	1836 bp upstream
Gm38140	predicted gene, 38140	within coordinates
Gm70605	predicted gene, 70605	1592 bp downstream
Gm70608	predicted gene, 70608	1046 bp downstream
Rr372065	regulatory region 372065	466 bp upstream