rs30881958 SNP Detail

Summary

• ID
  rs30881958
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134024086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCTCTA CCAGCTGCCA
  TCCCTGCAAG TGGCCCTACC TCTCTGAACA CCCAGTAGAG GCCAGCCTCC TCCGAAGCTG
  AGCGCGCCCT ACCCTGATTC TCTGGGGCTG ACTTATTTAA CTTCCATCTG TTGCTGGGGG
  TGGGGCAGAA GACATGAAAA GTACCCTCAA GTGCCCCCCC AAGATTGCGC ATTTCTCTTA
  S
  ACTCTGGGTC TCCTGCCCAG CATGGTAAGG GTGTGTAAGC CTGTCACGCC AGGAGTGTGG
  GAGAGCAGCC AGAACCTCTT TGTTCTCCCT AGCTCAGGAG AACCTGCAGC ACTGAATGGG
  TGTGTGTTTG GAAGAGGGCA CACAGCCAAG CGGTTTCTTG CGGGGGGCGG GGGGGGATGT
  TTCTACTACA TAAAACCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49679944	NES12993850	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30881958					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679944	NES12993850	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134024086 () rs orientation: forward

Symbol	Name	Function Class
Gm32039	predicted gene, 32039	1172 bp upstream
Gm38140	predicted gene, 38140	57 bp downstream
Gm70605	predicted gene, 70605	928 bp downstream
Gm70608	predicted gene, 70608	1710 bp downstream
Rr372065	regulatory region 372065	1130 bp upstream
Rr418809	regulatory region 418809	1705 bp distal