rs30881962 SNP Detail

Summary

• ID
  rs30881962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134023823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCTCCC AAAGAGGGTC
  ACAACTCCCC CGGGCATAGC CAACAGGGAA AGAACATAAA GAGGGTGTCC CGGAAGCCCT
  GAGATCCAGA CCCCTCAGAA ATGATGGGAG CTTCAGATTC TTCATCCAGA AAATGACGGT
  GAACTCTGTT TTCTGAGGCT GTGGGAAGAC TAGGGAGAGG CTGTGAGGTG TTCAGGAGAC
  Y
  CTTATCCTAA GCAATGCCAC CATGGGTACA CATGCTCTTC CGTCTGTCAC CTTTCCTAGC
  CCTGGGTCTC TACCAGCTGC CATCCCTGCA AGTGGCCCTA CCTCTCTGAA CACCCAGTAG
  AGGCCAGCCT CCTCCGAAGC TGAGCGCGCC CTACCCTGAT TCTCTGGGGC TGACTTATTT
  AACTTCCATC TGTTGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49679948	NES12993845	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30881962					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679948	NES12993845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134023823 () rs orientation: forward

Symbol	Name	Function Class
Gm32039	predicted gene, 32039	909 bp upstream
Gm38140	predicted gene, 38140	320 bp downstream
Gm70605	predicted gene, 70605	665 bp downstream
Gm70608	predicted gene, 70608	1973 bp downstream
Rr372065	regulatory region 372065	1393 bp upstream
Rr396311	regulatory region 396311	1860 bp downstream
Rr418809	regulatory region 418809	1442 bp distal