rs30882684 SNP Detail

Summary

• ID
  rs30882684
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134023588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGCTG TGTGTGTGTG
  TGTGTGTGTG CATGTGTGTG TGCGTGTGTG ACCTACTCCA CTCACACCTG AATGCCTTGG
  GCCCCTCCTG TGTCCTGAGT CTTCTGACCT GCCGTTGCCC ACTGGCATGG CCCTGGGCAT
  TCATTCTTCC TACCACCATA ACTTGGCTCC TAGGGAAATT TCCTCCCAAG TGGGAAGAAC
  S
  CCTCTAAGGA GAGGCAGATG TCTATGAGGA AGGCTGACCC TCCCAAAGAG GGTCACAACT
  CCCCCGGGCA TAGCCAACAG GGAAAGAACA TAAAGAGGGT GTCCCGGAAG CCCTGAGATC
  CAGACCCCTC AGAAATGATG GGAGCTTCAG ATTCTTCATC CAGAAAATGA CGGTGAACTC
  TGTTTTCTGA GGCTGTGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49679950	NES12993843	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30882684					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679950	NES12993843	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134023588 () rs orientation: forward

Symbol	Name	Function Class
Gm32039	predicted gene, 32039	674 bp upstream
Gm38140	predicted gene, 38140	555 bp downstream
Gm70605	predicted gene, 70605	430 bp downstream
Rr372065	regulatory region 372065	1628 bp upstream
Rr396311	regulatory region 396311	1625 bp downstream
Rr418809	regulatory region 418809	1207 bp distal
Tssr13771	transcription start site region 13771	1923 bp upstream