rs30882686 SNP Detail

Summary

• ID
  rs30882686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134023032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTAGGA TGCCTTAATA
  CAGGGCAGCT CGTCAAGCCC AGGGCAGGGC ACCCAGTATG AGCCCCCATC AGAGTCAGTT
  TCTTTTTGTC TATCAGCAAA CCCAAGTGGC AAAGGCAGAA GGAAGTGACC CCAAAGAATT
  TGGGGAAGTA AACTCTGTCC CTCTTTATGG GGGACAGGAG GGAAGAGGAA GGGCCTTCCT
  R
  GCTGGGTTCA CAGCCCTCCG TGTCGAGAGC CCCACCTGTC TTATTCCCGA GAGGAAGGTG
  GGTGCTCTTT ACAGAAGGGA CCTTGGGTGA GAAGTCTGCC TCCTCCCAGC TAGGACATTC
  CCCAAAGCCT GCCCCTCCCC TCTCCCATGC GTCCGGCCAC CCTTTTCAGC AGAGCTCACT
  GAAACAGCAG CTATCCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49679952	NES12993841	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30882686					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679952	NES12993841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134023032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	1733 bp distal
Gm32039	predicted gene, 32039	118 bp upstream
Gm38140	predicted gene, 38140	1111 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Rr396310	regulatory region 396310	1749 bp downstream
Rr396311	regulatory region 396311	1069 bp downstream
Rr418809	regulatory region 418809	651 bp distal
Rr418810	regulatory region 418810	1619 bp distal
Tssr8854	transcription start site region 8854	1990 bp downstream
Tssr13771	transcription start site region 13771	1367 bp upstream