rs30882687 SNP Detail

Summary

• ID
  rs30882687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134022680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCTAAT CACTAGCCAG
  GCTTCCAGGG AAGAGTACCC ATGGTAAGAA AACTAGACAG CTCTACACCC CATCTCTGTC
  ATGCCTGTGA CATGGGACCC TTCTGAGCCT TGGTGTCCCC ACTCCATGGA ATGGGGGGGA
  ACACCTTCAA ATTGGAGCCC CTGTGGTAGG AGATTAAAGT TGGTAAAGGG ACTCTGCAAA
  Y
  AGCCCTGGCC TCTCCATTTT AAATCTCCCT TTTCATCCCC AGCCGCTCCT GTAGCTGGGG
  CTGTCTCACA CTCTGTTCAT AGCTTTGTTG ATAGCTTTCC CTTTCCCACC AAGTTCTGGA
  AGCTGATACT GCCTCCCTCG GTGAGCATTC ACCAGGTAGG ATGCCTTAAT ACAGGGCAGC
  TCGTCAAGCC CAGGGCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49679953	NES12993840	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30882687					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679953	NES12993840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134022680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	1381 bp distal
Gm32039	predicted gene, 32039	within coordinates
Gm38140	predicted gene, 38140	1463 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Rr366718	regulatory region 366718	1726 bp downstream
Rr396310	regulatory region 396310	1397 bp downstream
Rr396311	regulatory region 396311	717 bp downstream
Rr418808	regulatory region 418808	1813 bp distal
Rr418809	regulatory region 418809	299 bp distal
Rr418810	regulatory region 418810	1267 bp distal
Tssr8854	transcription start site region 8854	1638 bp downstream
Tssr13771	transcription start site region 13771	1015 bp upstream