rs30882688 SNP Detail

Summary

• ID
  rs30882688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134022386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCTGATT TCCTCATTTG
  AGAAATAGCA ATGAAAGTAT TAGTCTTATT TGTTCCTTTG AGGACTGACG GGGGGGGGGG
  GGGGGAGACG TGCTTATTAA ACATGTTGCA CATACGTACC TTCTTTCTAC AGTGTTGAGC
  TACAGGCACA GAGTGAACAC TTCACAGTAA CGGTTACAGC TTTAGCGGCA ATGACAGTAA
  Y
  GGATGCTCTC CGGGATCATC GGGTGCTCCA GGTTCGCCTG TAGGGTCCTT TCCTCTTAGT
  TCTTCCAGGA CCCTTGTCAT TCCCCTTACC CCCTGCAGCT AATCACTAGC CAGGCTTCCA
  GGGAAGAGTA CCCATGGTAA GAAAACTAGA CAGCTCTACA CCCCATCTCT GTCATGCCTG
  TGACATGGGA CCCTTCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49679954	NES12993839	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30882688					SNP	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679954	NES12993839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134022386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	1087 bp distal
Gm32039	predicted gene, 32039	within coordinates
Gm38140	predicted gene, 38140	1757 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Gm70614	predicted gene, 70614	1753 bp upstream
Rr366718	regulatory region 366718	1432 bp downstream
Rr396310	regulatory region 396310	1103 bp downstream
Rr396311	regulatory region 396311	423 bp downstream
Rr418807	regulatory region 418807	1764 bp distal
Rr418808	regulatory region 418808	1519 bp distal
Rr418809	regulatory region 418809	5 bp distal
Rr418810	regulatory region 418810	973 bp distal
Tssr8854	transcription start site region 8854	1344 bp downstream
Tssr13771	transcription start site region 13771	721 bp upstream