rs30882691 SNP Detail

Summary

• ID
  rs30882691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134022230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTTGGG AATTGGATGA
  TGCCAGCGGT GTTGGGTGTG GGTGTGGAGC CGGCAGCAGG ATAGAGTTTG TGTTCATGCA
  TGTGGCTATG TGTAAACTTT GGGGACGTTA GCCCTGCCAC TCACTGTGAG GTCTTGGCCA
  GCTTCTCACT TCTCTGGATC CTGATTTCCT CATTTGAGAA ATAGCAATGA AAGTATTAGT
  Y
  TTATTTGTTC CTTTGAGGAC TGACGGGGGG GGGGGGGGGG AGACGTGCTT ATTAAACATG
  TTGCACATAC GTACCTTCTT TCTACAGTGT TGAGCTACAG GCACAGAGTG AACACTTCAC
  AGTAACGGTT ACAGCTTTAG CGGCAATGAC AGTAATGGAT GCTCTCCGGG ATCATCGGGT
  GCTCCAGGTT CGCCTGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49679957	NES12993836	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30882691					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679957	NES12993836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134022230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	931 bp distal
Gm32039	predicted gene, 32039	within coordinates
Gm38140	predicted gene, 38140	1913 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Gm70614	predicted gene, 70614	1597 bp upstream
Rr366718	regulatory region 366718	1276 bp downstream
Rr396310	regulatory region 396310	947 bp downstream
Rr396311	regulatory region 396311	267 bp downstream
Rr418807	regulatory region 418807	1608 bp distal
Rr418808	regulatory region 418808	1363 bp distal
Rr418809	regulatory region 418809	within coordinates
Rr418810	regulatory region 418810	817 bp distal
Tssr8854	transcription start site region 8854	1188 bp downstream
Tssr13771	transcription start site region 13771	565 bp upstream