rs30883015 SNP Detail

Summary

• ID
  rs30883015
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116514878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACACCA GAAGAGGGCA
  TCAGATCCCA TTACAGATGG TCGTGAGCCA CCATGTGGTT GCTAGGATTG AACTCTGGAC
  CTCTGGAAGA GCACTCAGTG CTCTTAACCA CTGAGCCGTC TCTCCAGCCC TGCCTTAGTA
  ACTCAGCTTT ATAGATATCT TTACAATTAT CATCCTGCAG GTTTCCCTTT GGAAGTTTGT
  S
  CAGCGTTCTA CAGTTGCTCC CTCCAGCCCC TTTAACTCTC TCACTCCACC AACTTCCACT
  TCCCTTTAAA CATAAGCCAA GAGCCTCTTC AAGCACACAA CTCCATAGCA CACACCAAAG
  CAGGAAGAGA CCATCGTTAC AGCTGGATGA TTTCCTGTGA TGGGAGCCAC ATCAAAGACT
  CTCTAGATGT CGTCATAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47992807	NES11988234	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	C		G
ss323490242	CHEV_10_116116029	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30883015					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47992807	NES11988234	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116514878 () rs orientation: forward

Symbol	Name	Function Class
Gm26579	predicted gene, 26579	within coordinates
Rr385348	regulatory region 385348	within coordinates