rs30883017 SNP Detail

Summary

• ID
  rs30883017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116515697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGCAG AGGCGGAGGT
  AGAACTCTCA GCCCCTTCTC CAGCACCAGG TCTGCCTGCC ACCATGCTTC GCCATGATGC
  TAATGGACTA GACCTCTGAA ATATAAGCCA GTCCCACTTA GATGTTTTCC TTGATAAGAG
  CTGCCATGGT TACAGTGTCC CTTCACAGCC ATTTCTTCAC AGTATAGATA AAGCTCCTTA
  Y
  ATCTGTAGAC TGTGGATACA TTTCTTGCTA ATAACAGATG ATAGCTTAGC GTCCACATCT
  CTTGGTTCTG TCCATCTGGA GGTTTCATGA CGCATTTAGT TTTCCATGAT TCATATGAGA
  TCCATATGAG GAAGCCGTTG ATTTGGGATG GACTTTGGGA GAGTGTTGCT TTTCTTTGCT
  TTTCTTTTTT CTTTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47992809	NES11988172	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	C		T
ss323490255	CHEV_10_116116848	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30883017					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47992809	NES11988172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116515697 () rs orientation: forward

Symbol	Name	Function Class
Gm26579	predicted gene, 26579	489 bp downstream
Rr385348	regulatory region 385348	within coordinates