rs30883284 SNP Detail

Summary

• ID
  rs30883284
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135798612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGATGCTGT ATTTGATTTG CTTTTTGTAG
  CCAGTACAAG TTCCCAGGTC CCCAAAGCAT TTCCAGAAGC CCCAGCGTAG TGCATCTAAT
  AGTGTGGGTT ACAGAGAATC ACAGTCCTCT CCTGATGGTC CTAGGATGCT ATAATGGAGG
  M
  CCTGTTAGTC ATGACTTCTG CAGGATGGGG AAAGCGCCCC TCCAGGGGTT TCCTTAGCAT
  CTCCCTTTTC TACCCAGGCA CCCCTGGTTC TCTCAGATGA TGATGGGGCT TACCCCGTAC
  CATGCCTGGG GTCTTCTATA TCCTTCTGTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44973479	mCV23238901	ABI	CRAMUS_MOUSE	f	SNP		C	A					A	A
ss49683193	NES12987237	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		A	A	C		C	A	A	A		A
ss145548816	ENSMUSSNP3274117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss319993916	CHEV_1_137767451	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30883284					SNP	C	C	A	A	A	A	A	A	A	A	C	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683193	NES12987237	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135798612 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	724 bp downstream
Pkp1	plakophilin 1	521 bp downstream
Tssr13903	transcription start site region 13903	1013 bp downstream