rs30883848 SNP Detail

Summary

• ID
  rs30883848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122295921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT TTCTCTCTCA ACAGATGAAC
  Y
  GCTGGGCGTA CCCCATCTTG TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39231308	mCV25174058	ABI	CRAMUS_MOUSE	f	SNP		C	C			T		T
ss52524809	NES15586792	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		C	T	C		C	C	C		C
ss324857815	CHEV_14_122457731	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30883848					SNP	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524809	NES15586792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122295921 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	445 bp upstream
Gm63496	predicted gene, 63496	1232 bp downstream
Rr498317	regulatory region 498317	456 bp distal
Rr498318	regulatory region 498318	135 bp distal
Tssr127312	transcription start site region 127312	143 bp downstream
Tssr130315	transcription start site region 130315	426 bp upstream