rs30884407 SNP Detail

Summary

• ID
  rs30884407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42109808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC CCACCGCCTA GAGGCAGGGC
  Y
  GAAGACAGCC TTCTGTCAGG TGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44973492	mCV24954834	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T	C
ss146410834	ENSMUSSNP3386360	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss325811616	CHEV_19_42195859	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30884407					SNP	C	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42109808 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	1906 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	within coordinates
Rr547821	regulatory region 547821	586 bp distal
Rr547822	regulatory region 547822	1157 bp proximal
Tssr156483	transcription start site region 156483	1102 bp downstream