rs30884547 SNP Detail

Summary

• ID
  rs30884547
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:158269318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGCCTTC ATAAACGAAA AGATGCCCTC CCATTAGGTA
  GGAGAAATTG TTTTTCTTTC CAATGGGAGA AAACTTTTGA AACCGAAAAC TAAAATTCAG
  W
  GCCACCACAA TATCATATTT TAAACCACAT GCCTTCTTTC TCCTTTTTCT TTAGATTATA
  ATCTCACTTT GGGCCATAAA TATCCAGACA AAAGGCATTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47494572	NES10303242	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30884547					SNP	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47494572	NES10303242	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:158269318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13981	CpG island 13981	1145 bp distal
Lrrc7	leucine rich repeat containing 7	1064 bp upstream
Rr588113	regulatory region 588113	970 bp distal
Tssr36316	transcription start site region 36316	1883 bp upstream
Tssr36317	transcription start site region 36317	1391 bp upstream