rs30884550 SNP Detail

Summary

• ID
  rs30884550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:158266504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACACCCCA ATAATTCCTT
  TATAGACACC AAGACAGTAA TACACCTTTC AAGATAAAGC ACAAGTGTGT GCTGCCACAA
  GTGTGTGTGT GTGTGTGTGT GTGTGTATCA CACTTGCTCC ATCCCTCACA CACCACGGGG
  AAAGCAGACT GGATACCCCA GGATCAAAAA AAAAAAAAAA ATGCAGAAAG CCATATCTCT
  Y
  AGGACTCCGT GGTCCCAGCA TCAGTTCCCC GCACTCGCTC CTCACCTTTC CTTTTCGCAA
  TATGTAACCC TTTAGAGTCC CTTGACCATC CAAAGCGCCG GGCTCCTAAG CACTTGTCCA
  GCTATCGCTG GATTCCACAG ACCGGCAACC GCCCCAACGC TGAGGCACCC GGGCCACCTG
  AGCCTCCCAG ATCCCCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47494575	NES10303241	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss136136854	ENSMUSSNP2643099	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30884550					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47494575	NES10303241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:158266504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13981	CpG island 13981	99 bp proximal
Lrrc7	leucine rich repeat containing 7	within coordinates
Rr588113	regulatory region 588113	1257 bp proximal
Tssr36312	transcription start site region 36312	467 bp downstream
Tssr36313	transcription start site region 36313	491 bp downstream
Tssr36314	transcription start site region 36314	674 bp downstream
Tssr36315	transcription start site region 36315	716 bp downstream
Tssr36316	transcription start site region 36316	872 bp downstream
Tssr36317	transcription start site region 36317	1332 bp downstream