rs30885245 SNP Detail

Summary

• ID
  rs30885245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:158265180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGACAG AAGCACGCGT
  TTCAGAAAGG CAGCAGCTTT TGGTGTTCTA GAGCACCCAT GTGCACGTGC TTGTGCTCAG
  GGTCTGAAGA ACTTTCCCCT ATGCCCTCAG AAAGAATGTA TCATTTCAAA CTAGGAACCA
  GCTGGGACCA GATAGATATC TGAATGGAGG GTACTGGAGG GAACGTTGAA ACAAAGAATG
  Y
  AGGATGTTGC TAACCAAGAG GCATCTCAGG CTGAGTTCCC TTTCGCTTTC TTTCACCTCT
  GGTCAACTTT ATTAAAAATA AAAGGGAACT TCAGCAACTG GGATGCTGAG CTTCTCATAG
  GCTCAGCTTG AAACAAAGAA AAGCTACTTC CTAATACAGT TTCTCTTGCG TTGGAGGGAT
  CACGTGTTCA CTTTCACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47494581	NES10303239	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30885245					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47494581	NES10303239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:158265180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13981	CpG island 13981	1423 bp proximal
Lrrc7	leucine rich repeat containing 7	within coordinates
Tssr36312	transcription start site region 36312	1791 bp downstream
Tssr36313	transcription start site region 36313	1815 bp downstream
Tssr36314	transcription start site region 36314	1998 bp downstream