rs30885311 SNP Detail

Summary

• ID
  rs30885311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136147260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgCTATAG GAGATTGTAt gtttacagca
  atgttacaga ccataactac catgagtaat gagaaccaac tgTACATCAA CGGAAAAAGA
  GCACTATGCA TTGTTAGAGA CCAACCATAA ACTATTATCT ATCAGTGCAA GGAAACAGCA
  Y
  GGCTGGAAAC CTCAAATGCT GCCTTCCTTC AAGCATGAGC TGCTCTGGGT TCTGCTAAAG
  AGCAGCCTCT TTGGAGAGGC ACCCCAGTGA GGGATGCAAA AGAGTACCCA AGGCACTAGC
  CATGTGTCAC CCCGGGTGTC TCAGCTGTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49680917	NES12977951	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	C		C	T	T	C		T
ss319995084	CHEV_1_138116099	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30885311					SNP	C	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680917	NES12977951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136147260 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	862 bp downstream
Tssr9051	transcription start site region 9051	1208 bp upstream