rs30885336 SNP Detail

Summary

• ID
  rs30885336
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136071855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAGAACC AGCACGTGTG TCTGAGAGCG
  TCACAAAGCC CTGGTTGCCG CATTGAAGAC CCTCATAGCC TCTACAGGTC CCTGCCTCTG
  TTCTAACCTT CTCCTAGACT GGCTCAGAAG AATGTGGTCA GGAGTTGTAG GGTGCTGCCT
  S
  TCCTGTCCTT CTCTCTCCAT CCTTGGCCCT AAGCTGTATC TCTCTAGAAT GTGCTAGCTT
  TCACCTCCTT CCAGGCCTCT GGGGGTCAGG GGTTGTGGCG GTGGTGGTGA TAGTATGCCT
  TTGCCCAGGT TTGGTCCCTT CACTCTCTGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45175445	mCV27592245	ABI	CRAMUS_MOUSE	f	SNP		G	C					C		G
ss49681312	NES12979970	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		G	G	C	G		G	C	G	G		G
ss145553452	ENSMUSSNP1397011	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							G
ss319994863	CHEV_1_138040694	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30885336					SNP	G	G	C	C	C	C	C	C	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681312	NES12979970	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136071855 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	346 bp proximal
Rr30732	regulatory region 30732	1947 bp proximal
Rr407175	regulatory region 407175	315 bp distal
Tssr9046	transcription start site region 9046	1111 bp upstream