rs30885338 SNP Detail

Summary

• ID
  rs30885338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136071793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAG CCTCTACAGG TCCCTGCCTC
  K
  GTTCTAACCT TCTCCTAGAC TGGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45192015	mCV27592244	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		G
ss49681314	NES12979968	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		G	G	T	G		G	T	G	G		G
ss145553447	ENSMUSSNP1417662	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							G
ss319994862	CHEV_1_138040632	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30885338					SNP	G	G	T	T	T	T	T	T	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681314	NES12979968	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136071793 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr407175	regulatory region 407175	253 bp distal
Tssr9046	transcription start site region 9046	1173 bp upstream