rs30885339 SNP Detail

Summary

• ID
  rs30885339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136071480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGCGCGG CCAATGGGGC CACTAGCGTG
  AGTCCATGGC AGTAGAGCCT ACCCCCACTC TTGCTTTGGG ATGTCTGAAG TGTACTTTCT
  GCCAGTCCTT GCACGCGCAT GCTTACTGAC TCATGCTTGG TTTCCATGGG GACCTCATCC
  Y
  GGTGATGCAG CTTTGAAAAG GGAATGAGGG GGTGGATGGA TGGAGACAAT TTCGCCCATG
  GCTGGCTCCC CACTCAGGAC TGATGCCACT TGTCCTCCAC CTAGGGACTC CTCCTCTGAA
  CCAGTATCTG GGATGTAGAT CAACCCCGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45067199	mCV27592242	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss49681315	NES12979967	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	T	C	T		C	C	T	C		C
ss145553437	ENSMUSSNP53586	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss319994860	CHEV_1_138040319	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30885339					SNP	T	T	C	C	C	C	C	C	C	T	C	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681315	NES12979967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136071480 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	721 bp proximal
Rr407175	regulatory region 407175	within coordinates
Tssr9046	transcription start site region 9046	1486 bp upstream