rs30885341 SNP Detail

Summary

• ID
  rs30885341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136071107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGAAAGT CACTCACTAA AGTGACTGTT
  TACACCTCCA AGGAAACACT CCTGAAAAAA ACCAGACTCC CACATATGGA TAGAGTCTTG
  CCCAAGTACC CACCCTTCCC ACAGACACCT ACCCCTCCCC AGTCCTTATC CACAGCAGAG
  Y
  GGAGTGGCAA TCTCGGGTGC TCCTCACCCA GCTGATGGCT CTGAGTGGGC GTTTGGGGGA
  AGGAGCAACT GGGACAAGGA CATGATGGTG ATTTAGAGGT GCTGGGGTCT GCAGCTAGGC
  ACCTCTGGGC CATCAGTGGG CAATTGCCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49681318	NES12979964	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	T	C	T		C	C	T	C		C
ss145553422	ENSMUSSNP4792992	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss319994856	CHEV_1_138039946	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30885341					SNP	T	T	C	C	C	C	C	C	T	C	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681318	NES12979964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136071107 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1094 bp proximal
Rr407175	regulatory region 407175	within coordinates
Tssr9046	transcription start site region 9046	1859 bp upstream