rs30885663 SNP Detail

Summary

• ID
  rs30885663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46502205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA ATTTTGAAAA CTAAAAGAAA
  Y
  AAATTTTGGC AGCTACCTCA TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44973712	mCV22842035	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146452629	ENSMUSSNP7146469	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325822658	CHEV_19_46588256	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30885663					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46502205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1247 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	850 bp upstream
Tssr156777	transcription start site region 156777	1556 bp upstream
Tssr156778	transcription start site region 156778	1948 bp upstream