About   Help   FAQ
rs30886705 SNP Detail
Summary
  • ID
    rs30886705
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:89313891 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTCCT TTATGGCCAA AGGACACAAA
    M
    CCAGGCTTTG GTCGCTTTAC CTGGC                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45974329 mCV24907966 ABI CRAMUS_MOUSE f SNP C A C
ss133371764 ENSMUSSNP4797960 ENSEMBL ENSEMBL_Sanger f SNP C
ss321851926 CHEV_6_89286903 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs30886705 SNP C A C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89313891 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Plxna1 plexin A1 within coordinates
Rr141614 regulatory region 141614 310 bp proximal
Rr150842 regulatory region 150842 692 bp distal
Rr150843 regulatory region 150843 1311 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory