rs3088673 SNP Detail

Summary

• ID
  rs3088673
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:8452194 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGT CACTACCAAC CCTGCCAGCG
  M
  TATGCACCCT GCTGTATCTG TCAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss4325536	M-08924-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		A	A		C		C			C		A	C	A
ss37103186	NES08394189	PERLEGEN	MM_PANEL2	r	SNP	T			T		G		G	G		G		G		T	T	T		T	G	T	G		G
ss323553215	CHEV_11_8402197	CHEVERUD	SCREENING_POP	r	SNP																		G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3088673					SNP	A	A	A	A	C	C	C	C	C	C	C	A	C	A	A	A	A	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37103186	NES08394189	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8452194 () rs orientation: reverse

Symbol	Name	Function Class
Rr442532	regulatory region 442532	791 bp distal
Rr442533	regulatory region 442533	647 bp proximal
Tns3	tensin 3	within coordinates
Tssr106802	transcription start site region 106802	1589 bp downstream
Tssr106803	transcription start site region 106803	1602 bp downstream
Tssr106804	transcription start site region 106804	1692 bp downstream