rs30887925 SNP Detail

Summary

• ID
  rs30887925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136141590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGGGGGG GCATCTATGC ACTGGGGAAG GGGCTCAGAA
  GCCATACAAT ATGGCAAGTG GAGGTTGGGA CTACTGTAGG GTATGGGAAG AACACCATGA
  Y
  AGAAATGCCT GTGCCCTGAA GGGGAGAGGA GAGTTCTGCC CAGCATCTGG GAAACAAGGG
  AAGAGTCCCT GTTGAGGGAG TCCCACATCC GGCCTCCAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49680941	NES12978179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30887925					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680941	NES12978179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136141590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi807	CpG island 807	1914 bp proximal
Inava	innate immunity activator	mRNA-UTR
Mroh3	maestro heat-like repeat family member 3	1024 bp upstream
Rr419387	regulatory region 419387	565 bp distal
Rr419388	regulatory region 419388	823 bp distal
Rr419389	regulatory region 419389	889 bp proximal
Tssr13921	transcription start site region 13921	1024 bp upstream