rs30887926 SNP Detail

Summary

• ID
  rs30887926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136141310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCATGAC CAAACCAGGC AGCCATCTCA
  AGGAGCCCAC TCTGTGCTTG GTCAAAACAA ACAAACAAAC AAAAAAAACA ACTCAGCACA
  CACACAGAAT CCTTCATCCT CAGCTGGGCC AATCAGATTT TATTGAAGTA TTTGGCACAA
  R
  GTTGCCCTGT AACGGAGGGC ACCGCCACGG TGCAACCACA CGAGATAGCT GTTAGGTAAG
  ACCAATAAGT TAATTAATGT GAAGGATGCT CAGGTGTGGG GAGGCACTAG CACTCAGAAG
  TCTCTCAGCT CTGTGGCTCA GGATCTAAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45053888	mCV24740308	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss49680943	NES12978177	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	A		G	G	G	G		G
ss145554149	ENSMUSSNP25091	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss319995063	CHEV_1_138110149	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30887926					SNP	A	A	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680943	NES12978177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136141310 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	mRNA-UTR
Mroh3	maestro heat-like repeat family member 3	744 bp upstream
Rr419387	regulatory region 419387	285 bp distal
Rr419388	regulatory region 419388	543 bp distal
Rr419389	regulatory region 419389	1169 bp proximal
Tssr13921	transcription start site region 13921	744 bp upstream