rs30887927 SNP Detail

Summary

• ID
  rs30887927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136141168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCGCTG AAGTGCCTTC
  CAAGGTTACT CCATGGAGCT GCCATGAGGG TGCTGAAAAT GGAATCTGGG CTTTCCAGAT
  TTTAACAGTT GAGCTAAAAG TTCAGGCTCT GGAGACCTTG AGGAGCTTTG CTGGATTCCC
  TGTGCTCAGA GAAGCAGCTT GAGTTTCTGT CTGTCACTCT GCTTGCTCCC TAGAGTCATG
  R
  CCAAACCAGG CAGCCATCTC AAGGAGCCCA CTCTGTGCTT GGTCAAAACA AACAAACAAA
  CAAAAAAAAC AACTCAGCAC ACACACAGAA TCCTTCATCC TCAGCTGGGC CAATCAGATT
  TTATTGAAGT ATTTGGCACA AGGTTGCCCT GTAACGGAGG GCACCGCCAC GGTGCAACCA
  CACGAGATAG CTGTTAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49680944	NES12978176	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30887927					SNP	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680944	NES12978176	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136141168 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	101 bp downstream
Mroh3	maestro heat-like repeat family member 3	mRNA-UTR
Rr419387	regulatory region 419387	143 bp distal
Rr419388	regulatory region 419388	401 bp distal
Rr419389	regulatory region 419389	1311 bp proximal
Tssr13921	transcription start site region 13921	602 bp upstream