rs30887932 SNP Detail

Summary

• ID
  rs30887932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136140854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCTGC CTGACACAGA
  GCTGCTACCT CAGACTCAGG CCACAAGCTC TCCAGAAACT GTAGCCATAG CAGGCGCTCT
  GCTCTCAAGT CCTGAGCACC CCCTACAGGG CAGCAGAAAA AGTTGCAGCC TCCCTCCAAC
  ACCCCTCTCC TCCTACTACC CCTCCCTCTC CACCTTTTGC AAAAACACAG AAGGGGTCTT
  R
  TGGAGAGCCC CTCCTTACCC AAGGAACGCC TGTTTTTCCA GCCACAAGAA CAATTTCAAA
  TAAGCCTCAA ACCACTGAGC CTGGGCCATC TGAAGCCAGA GAAAAAGGGA TCACAAAGCG
  CTGAAGTGCC TTCCAAGGTT ACTCCATGGA GCTGCCATGA GGGTGCTGAA AATGGAATCT
  GGGCTTTCCA GATTTTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49680949	NES12978171	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30887932					SNP	A	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680949	NES12978171	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136140854 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	415 bp downstream
Mroh3	maestro heat-like repeat family member 3	mRNA-UTR
Rr419387	regulatory region 419387	within coordinates
Rr419388	regulatory region 419388	87 bp distal
Rr419389	regulatory region 419389	1625 bp proximal
Tssr13921	transcription start site region 13921	288 bp upstream