rs30887959 SNP Detail

Summary

• ID
  rs30887959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51490268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGCCTC AAACTCACAG
  GGTAGCATAG GATGGTTTCA CACTCTCCAT CCTCTTGTCT CTACCTCAAG ATACTAGGAT
  TATGGGATGC TCTGTCCATG CAGTGCTAGG CACTGGACCC AGGATTCTGT ACATGGTAGG
  CAAGCACTGC CAACTGAGCT ACATTCCAAG CCCTCACATG CCTGTTGTAA CTCTAGACCA
  Y
  CATGCCTGCT CTAATCTATT GCATGGATCC AAGTCTTATT AGGCTTGGAG AATGAGCTCC
  TGATTGGAAC CCACAGTTCC AGTCCTGCCT CCCAACAGTC ACATTCTGCA CAACAGAGTG
  TGCATCTTAG GTTGTATCTG CCTCTGATCA ACACTCTTCC TCTGAGCACT GCCAGGAAAC
  CATTGCTTCT TAACCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49181983	NES12486815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30887959					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49181983	NES12486815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51490268 () rs orientation: forward

Symbol	Name	Function Class
D14Mit257	DNA Segment, Chr 14 Massachusetts Institute of Technology 257	1904 bp distal
Gm62421	predicted gene, 62421	within coordinates
Tssr125425	transcription start site region 125425	1053 bp upstream