rs30887982 SNP Detail

Summary

• ID
  rs30887982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90448557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCATATCC TGTTATTCAG AAGGCTGTAT CCGCTTGGAG
  TGTGAGTGAG TGGCCTTTTG TTCTGGGGTG AGGGGGTGAT GCGTGTAGCC TGTGCCAGGC
  R
  GCAACTGTGT CCAGAGGCCC AGAGTCTGAC TCCAGCTGGG GCAGAACTGG GCCAGGATCT
  TCCTTAGGTA ATGGGGCGAA GGGTGTCGTT GGGCCCTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45475019	mCV24985685	ABI	CRAMUS_MOUSE	f	SNP		G	G	A
ss135476824	ENSMUSSNP5813465	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320837961	CHEV_3_90345172	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30887982					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90448557 () rs orientation: forward

Symbol	Name	Function Class
Rr580398	regulatory region 580398	79 bp distal
Rr580399	regulatory region 580399	within coordinates
Rr580400	regulatory region 580400	1667 bp proximal
S100a16	S100 calcium binding protein A16	within coordinates
Tssr30222	transcription start site region 30222	1590 bp downstream
Tssr30223	transcription start site region 30223	1559 bp downstream
Tssr30224	transcription start site region 30224	77 bp downstream
Tssr30225	transcription start site region 30225	64 bp downstream
Tssr30226	transcription start site region 30226	37 bp downstream
Tssr30227	transcription start site region 30227	9 bp downstream
Tssr30228	transcription start site region 30228	8 bp upstream