rs30887988 SNP Detail

Summary

• ID
  rs30887988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAAACA GGTCCAACTT
  CTGTGGCTGT CATTCCTGGA ATATGAATAC ACTGAGTGCT TAAAACTGAA AATCAAAGCT
  TCTCCTAATA TATTTGTGCT AAAATGCAAT GCCCTCAATT GTTAACAGGG CATGATGCAT
  TAATTTTATA AATCAGTGGT TGTTTGTAGA GCTGGAAGCC TTGTGACCTT GTGTTAGCTA
  Y
  TTTTTACATG ATTGGTGAAG GAGGAGAAAA ATGGCCTCCC AATGCAGGAT ACTCTAGCAC
  CCTACCTCTT AGACAAGTAG ATTTGGGCTT GGCTTAAATT TTTTTCTCTG CACTAATACC
  GAGCCGTAGA ACACTTGATA AAGCCAAGTC CCAAGGTTTG CCTTCCCATC CTTACTGAAC
  TTTTAAAAGG CCGAGTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44973265	mCV23006763	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C	C
ss50605214	NES13645666	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	T		T	C	C	T		T
ss146039581	ENSMUSSNP3236495	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss325719631	CHEV_19_10058393	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30887988					SNP	C	C	T	C	T	C	T	C	C	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605214	NES13645666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961267 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	1271 bp downstream
Cpgi10595	CpG island 10595	518 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1383 bp upstream
Rr543964	regulatory region 543964	1396 bp distal
Rr543965	regulatory region 543965	1170 bp distal
Rr543966	regulatory region 543966	within coordinates
Rr543967	regulatory region 543967	428 bp proximal
Tssr155003	transcription start site region 155003	1192 bp downstream
Tssr155004	transcription start site region 155004	1051 bp downstream
Tssr155005	transcription start site region 155005	785 bp downstream
Tssr155006	transcription start site region 155006	275 bp upstream
Tssr155007	transcription start site region 155007	344 bp upstream
Tssr155008	transcription start site region 155008	654 bp upstream
Tssr155009	transcription start site region 155009	1000 bp upstream
Tssr155010	transcription start site region 155010	1190 bp upstream
Tssr158131	transcription start site region 158131	1468 bp upstream
Tssr158132	transcription start site region 158132	1454 bp upstream
Tssr158133	transcription start site region 158133	1397 bp upstream
Tssr158134	transcription start site region 158134	1372 bp upstream
Tssr158135	transcription start site region 158135	1336 bp upstream
Tssr158136	transcription start site region 158136	963 bp upstream
Tssr158137	transcription start site region 158137	316 bp downstream
Tssr158138	transcription start site region 158138	362 bp downstream
Tssr158139	transcription start site region 158139	682 bp downstream
Tssr158140	transcription start site region 158140	903 bp downstream
Tssr158141	transcription start site region 158141	954 bp downstream
Tssr158142	transcription start site region 158142	970 bp downstream
Tssr158143	transcription start site region 158143	1029 bp downstream
Tssr158144	transcription start site region 158144	1186 bp downstream