rs30888113 SNP Detail

Summary

• ID
  rs30888113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136074368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTTGCCA TTCTGTTGCC ATGGAGAACT
  TCCATGCTAG CAAGTCCAGG CCAAAGAGTG CACCACAGGG GCTTAACTGA TGCAGTGTGT
  CTACACCAAT ACAAGACACA CAGACACCAT GAAACTCTGT CTCCTCCATC TCTTCCTTCT
  R
  TTTCCTCTTC CCCTTCCTGT GGGGGTATTT TTGTCCCCTT AAGGCCATCA AAACTTGGAT
  GTCTGAGGGC TGCAGTGCCC TCTCTCTGTC TCCATAGGTC TTGGCTGCTG CCATCTCCca
  ccccacccca ccccacccca ccacacccca                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49681299	NES12979882	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	G		G	A	G		A
ss319994875	CHEV_1_138043207	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30888113					SNP	G	A	A	A	A	A	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681299	NES12979882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136074368 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1968 bp distal
Rr30732	regulatory region 30732	within coordinates
Tssr9046	transcription start site region 9046	1395 bp downstream
Tssr9047	transcription start site region 9047	79 bp downstream
Tssr9048	transcription start site region 9048	22 bp upstream