rs30888373 SNP Detail

Summary

• ID
  rs30888373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105283952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG GAAGAACCTC CAGTTATATC
  Y
  CAGGCTACCG TTGCCCTTTC CCGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss44973643	mCV25150513	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145082627	ENSMUSSNP2360285	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss319882711	CHEV_1_107252804	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs30888373					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105283952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	within coordinates
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	210 bp distal
Rr416388	regulatory region 416388	within coordinates
Rr416389	regulatory region 416389	179 bp distal
Rr416390	regulatory region 416390	332 bp proximal
Rr416391	regulatory region 416391	433 bp proximal
Rr416392	regulatory region 416392	516 bp proximal
Tssr8255	transcription start site region 8255	490 bp upstream
Tssr8256	transcription start site region 8256	542 bp upstream
Tssr8257	transcription start site region 8257	619 bp upstream
Tssr8258	transcription start site region 8258	832 bp upstream
Tssr13126	transcription start site region 13126	253 bp downstream
Tssr13127	transcription start site region 13127	413 bp downstream
Tssr13128	transcription start site region 13128	431 bp downstream
Tssr13129	transcription start site region 13129	542 bp downstream
Tssr13130	transcription start site region 13130	707 bp downstream